Index of Names

Modules Classes Names

A

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

A - maptial.xyz.vectorthree.VectorThree.A
a - maptial.xyz.axestransform.CrsTransform.a
AbsValueScore - maptial.pol.scoring.AbsValueScore
add - maptial.xyz.matrix3d.Matrix3d.add
add_atoms - maptial.geo.pdbobject.PdbObject.add_atoms
add_line_string - maptial.geo.pdbobject.PdbObject.add_line_string
add_map - maptial.map.mapsmanager.MapsManager.add_map
add_plot_slice - maptial.map.mapplotter.MapPlotter.add_plot_slice
add_plot_slice_2d - maptial.map.mapplothelp.MapPlotHelp.add_plot_slice_2d
add_plot_slice_3d - maptial.map.mapplothelp.MapPlotHelp.add_plot_slice_3d
add_points - maptial.map.mapplothelp.MapPlotHelp.add_points
addBoxComment - maptial.geo.reportmaker.ReportMaker.addBoxComment
addContours - maptial.geo.reportmaker.ReportMaker.addContours
addDataFrame - maptial.geo.reportmaker.ReportMaker.addDataFrame
addLineComment - maptial.geo.reportmaker.ReportMaker.addLineComment
addPlot1d - maptial.geo.reportmaker.ReportMaker.addPlot1d
addPlot2d - maptial.geo.reportmaker.ReportMaker.addPlot2d
addPlotOnly - maptial.geo.reportmaker.ReportMaker.addPlotOnly
addPlotPi - maptial.geo.reportmaker.ReportMaker.addPlotPi
addPoints2d - maptial.geo.reportmaker.ReportMaker.addPoints2d
addSeries - maptial.geo.reportmaker.ReportMaker.addSeries
addSeries_Not - maptial.geo.reportmaker.ReportMaker.addSeries_Not
addSeries_Transposed - maptial.geo.reportmaker.ReportMaker.addSeries_Transposed
addSurface - maptial.geo.reportmaker.ReportMaker.addSurface
adj_values_list - maptial.pol.interpolator.Interpolator.adj_values_list
alcraft
- maptial.pol.invariantmaker.InvariantMaker.alcraft
- maptial.pol.iv1.InvariantVandermonde.alcraft
- maptial.pol.iv2.InvariantVandermonde.alcraft
- maptial.pol.iv3.InvariantVandermonde.alcraft
- maptial.pol.iv5.InvariantVandermonde.alcraft
alpha - maptial.xyz.axestransform.CrsTransform.alpha
already_started_map - maptial.map.maploader.MapLoader.already_started_map
already_started_pdb - maptial.map.maploader.MapLoader.already_started_pdb
amino_acid - maptial.geo.pdbobject.PdbResidue.amino_acid
amino_acids - maptial.geo.pdbobject.amino_acids
angles - maptial.xyz.crstransform.CrsTransform.angles
apply_transformation - maptial.xyz.spacetransform.SpaceTransform.apply_transformation
applyValue3 - maptial.pol.interpolator.Bspline.applyValue3
applyValue5 - maptial.pol.interpolator.Bspline.applyValue5
applyValue7 - maptial.pol.interpolator.Bspline.applyValue7
applyValue9 - maptial.pol.interpolator.Bspline.applyValue9
as_sd - maptial.map.mapfunctions.MapFunctions.as_sd
Atom - maptial.map.atom.Atom
atom - maptial.map.atom
atom_name - maptial.geo.pdbobject.PdbAtom.atom_name
atom_no - maptial.geo.pdbobject.PdbAtom.atom_no
atom_type - maptial.geo.pdbobject.PdbAtom.atom_type
atoms - maptial.geo.pdbobject.PdbResidue.atoms
ax - maptial.geo.reportmaker.ReportMaker.ax
axestransform - maptial.xyz.axestransform
axis_sampling - maptial.xyz.crstransform.CrsTransform.axis_sampling

B

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

B - maptial.xyz.vectorthree.VectorThree.B
b - maptial.xyz.axestransform.CrsTransform.b
beta - maptial.xyz.axestransform.CrsTransform.beta
bfactor - maptial.geo.pdbobject.PdbAtom.bfactor
bio_struc - maptial.geo.pdbobject.PdbObject.bio_struc
Boxion - maptial.pol.iteration.Boxion
Bspline - maptial.pol.interpolator.Bspline
buffer
- maptial.pol.interpolator.Bspline.buffer
- maptial.pol.interpolator.Interpolator.buffer
build_cube_around - maptial.pol.interpolator.Interpolator.build_cube_around

C

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

C - maptial.xyz.vectorthree.VectorThree.C
c - maptial.xyz.axestransform.CrsTransform.c
CACHE - maptial.map.mapsmanager.MapsManager.CACHE
calculateContacts - maptial.geo.pdbcontacts.ContactMaker.calculateContacts
calculateContacts 0 - maptial.geo.pdbcontacts.ContactMaker.calculateContacts 0
calculateData
- maptial.geo.pdbcontacts.ContactMaker.calculateData
- maptial.geo.pdbgeometry.GeometryMaker.calculateData
calculateGeometry - maptial.geo.pdbgeometry.GeometryMaker.calculateGeometry
calculateOneGeometry
- maptial.geo.pdbcontacts.ContactMaker.calculateOneGeometry
- maptial.geo.pdbgeometry.GeometryMaker.calculateOneGeometry
ccp4_link - maptial.map.mapobject.MapObject.ccp4_link
cell_dims - maptial.xyz.crstransform.CrsTransform.cell_dims
central
- maptial.map.mapplotter.MapPlotter.central
- maptial.xyz.spacetransform.SpaceTransform.central
centre - maptial.xyz.spacetransform.SpaceTransform.centre
chain - maptial.geo.pdbobject.PdbAtom.chain
chains - maptial.geo.pdbobject.PdbObject.chains
changeColNumber - maptial.geo.reportmaker.ReportMaker.changeColNumber
cif - maptial.geo.pdbloader.PdbLoader.cif
cif_filepath - maptial.geo.pdbloader.PdbLoader.cif_filepath
cif_url - maptial.geo.pdbloader.PdbLoader.cif_url
cleanup - maptial.map.maploader.MapLoader.cleanup
clear - maptial.map.mapsmanager.MapsManager.clear
closest - maptial.pol.interpolator.Interpolator.closest
clr_background - maptial.geo.reportmaker.ReportMaker.clr_background
clr_behindplot - maptial.geo.reportmaker.ReportMaker.clr_behindplot
clr_header - maptial.geo.reportmaker.ReportMaker.clr_header
cols - maptial.geo.reportmaker.ReportMaker.cols
ContactMaker - maptial.geo.pdbcontacts.ContactMaker
convert_coords - maptial.xyz.spacetransform.SpaceTransform.convert_coords
convert_coords3d - maptial.xyz.spacetransform.SpaceTransform.convert_coords3d
convert_coords_to_crs - maptial.xyz.crstransform.CrsTransform.convert_coords_to_crs
convert_coords_to_xyz - maptial.xyz.crstransform.CrsTransform.convert_coords_to_xyz
convert_to_interp_coeffs - maptial.pol.interpolator.Bspline.convert_to_interp_coeffs
coords - maptial.map.atom.Atom.coords
corners - maptial.pol.interpolator.Interpolator.corners
create_coeffs - maptial.pol.interpolator.Bspline.create_coeffs
create_interpolator - maptial.pol.interpolator.create_interpolator
create_iteration - maptial.pol.iteration.create_iteration
create_scoring - maptial.pol.scoring.create_scoring
crossProduct - maptial.geo.geocalculator.crossProduct
crs_spc - maptial.map.mapfunctions.MapFunctions.crs_spc
crs_starts - maptial.xyz.crstransform.CrsTransform.crs_starts
crs_to_xyz
- maptial.xyz.axestransform.CrsTransform.crs_to_xyz
- maptial.xyz.crstransform.CrsTransform.crs_to_xyz
CrsTransform
- maptial.xyz.axestransform.CrsTransform
- maptial.xyz.crstransform.CrsTransform
crstransform - maptial.xyz.crstransform

D

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

DATADIR - maptial.map.mapsmanager.MapsManager.DATADIR
dataFrame - maptial.geo.pdbobject.PdbObject.dataFrame
degree - maptial.pol.interpolator.Interpolator.degree
deOrthoMat - maptial.xyz.crstransform.CrsTransform.deOrthoMat
depth - maptial.xyz.matrix3d.Matrix3d.depth
diff_has - maptial.map.mapobject.MapObject.diff_has
diff_link - maptial.map.mapobject.MapObject.diff_link
diff_values - maptial.map.mapobject.MapObject.diff_values
diffWRTx - maptial.pol.interpolator.Multivariate.diffWRTx
diffWRTy - maptial.pol.interpolator.Multivariate.diffWRTy
diffWRTz - maptial.pol.interpolator.Multivariate.diffWRTz
dim_order - maptial.xyz.crstransform.CrsTransform.dim_order
dimsize - maptial.pol.interpolator.Multivariate.dimsize
directory - maptial.geo.pdbloader.PdbLoader.directory
disordered - maptial.geo.pdbobject.PdbAtom.disordered
distance
- maptial.map.atom.Atom.distance
- maptial.xyz.vectorthree.VectorThree.distance
dot_product - maptial.xyz.vectorthree.VectorThree.dot_product
download - maptial.map.maploader.MapLoader.download
download_map - maptial.map.maploader.MapLoader.download_map
download_pdb
- maptial.geo.pdbloader.PdbLoader.download_pdb
- maptial.map.maploader.MapLoader.download_pdb

E

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

ebi_link - maptial.map.mapobject.MapObject.ebi_link
elementInList - maptial.geo.pdbobject.PdbObject.elementInList
elements - maptial.geo.pdbobject.PdbResidue.elements
em_code
- maptial.map.maploader.MapLoader.em_code
- maptial.map.mapobject.MapObject.em_code
em_link - maptial.map.mapobject.MapObject.em_link
em_loaded - maptial.map.maploader.MapLoader.em_loaded
exc_hetatm
exists - maptial.map.maploader.MapLoader.exists
exists_map
- maptial.map.maploader.MapLoader.exists_map
- maptial.map.mapsmanager.MapsManager.exists_map
exists_pdb
- maptial.geo.pdbloader.PdbLoader.exists_pdb
- maptial.map.maploader.MapLoader.exists_pdb
exp_method
- maptial.geo.pdbobject.PdbObject.exp_method
- maptial.map.mapobject.MapObject.exp_method
extend_vals_with_buffer - maptial.pol.interpolator.Interpolator.extend_vals_with_buffer

F

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

F - maptial.map.mapobject.MapObject.F
fc - maptial.map.mapfunctions.MapFunctions.fc
fig - maptial.geo.reportmaker.ReportMaker.fig
filename
- maptial.map.mapplothelp.MapPlotHelp.filename
- maptial.map.mapplotter.MapPlotter.filename
filterDataFrame
- maptial.geo.pdbcontacts.ContactMaker.filterDataFrame
- maptial.geo.pdbgeometry.GeometryMaker.filterDataFrame
fo - maptial.map.mapfunctions.MapFunctions.fo
from_coords - maptial.xyz.vectorthree.VectorThree.from_coords
fromJson - maptial.geo.pdbobject.PdbObject.fromJson

G

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

gamma - maptial.xyz.axestransform.CrsTransform.gamma
geo - maptial.geo
geocalculator - maptial.geo.geocalculator
GeometryMaker - maptial.geo.pdbgeometry.GeometryMaker
GeometryRow
- maptial.geo.pdbcontacts.GeometryRow
- maptial.geo.pdbgeometry.GeometryRow
geoToAtoms
- maptial.geo.pdbcontacts.ContactMaker.geoToAtoms
- maptial.geo.pdbgeometry.GeometryMaker.geoToAtoms
get - maptial.xyz.matrix3d.Matrix3d.get
get_adjusted_fms - maptial.pol.interpolator.Interpolator.get_adjusted_fms
get_adjusted_fms_buffered - maptial.pol.interpolator.Interpolator.get_adjusted_fms_buffered
get_adjusted_fms_maybe - maptial.pol.interpolator.Interpolator.get_adjusted_fms_maybe
get_angle - maptial.xyz.vectorthree.VectorThree.get_angle
get_as_np - maptial.xyz.matrix3d.Matrix3d.get_as_np
get_as_vals - maptial.xyz.matrix3d.Matrix3d.get_as_vals
get_atm_key - maptial.geo.pdbobject.PdbObject.get_atm_key
get_atom_coords - maptial.geo.pdbobject.PdbObject.get_atom_coords
get_atoms_projection - maptial.map.mapfunctions.MapFunctions.get_atoms_projection
get_by_idx - maptial.xyz.vectorthree.VectorThree.get_by_idx
get_coeff - maptial.pol.interpolator.Bspline.get_coeff
get_col3d - maptial.pol.interpolator.Bspline.get_col3d
get_coords - maptial.geo.pdbobject.PdbObject.get_coords
get_coords_key - maptial.geo.pdbobject.PdbObject.get_coords_key
get_criticalpoint
- maptial.pol.interpolator.Bspline.get_criticalpoint
- maptial.pol.interpolator.Interpolator.get_criticalpoint
- maptial.pol.interpolator.Linear.get_criticalpoint
- maptial.pol.interpolator.Multivariate.get_criticalpoint
- maptial.pol.interpolator.Nearest.get_criticalpoint
- maptial.pol.interpolator.Numpest.get_criticalpoint
get_criticalpoint_numerical - maptial.pol.interpolator.Interpolator.get_criticalpoint_numerical
get_criticalpoints
- maptial.pol.interpolator.Bspline.get_criticalpoints
- maptial.pol.interpolator.Interpolator.get_criticalpoints
- maptial.pol.interpolator.Linear.get_criticalpoints
- maptial.pol.interpolator.Multivariate.get_criticalpoints
- maptial.pol.interpolator.Nearest.get_criticalpoints
- maptial.pol.interpolator.Numpest.get_criticalpoints
get_criticalpoints_extended_list - maptial.pol.interpolator.Interpolator.get_criticalpoints_extended_list
get_criticalpoints_individual - maptial.pol.interpolator.Interpolator.get_criticalpoints_individual
get_criticalpoints_list_numerical - maptial.pol.interpolator.Interpolator.get_criticalpoints_list_numerical
get_cross_section - maptial.pol.interpolator.Interpolator.get_cross_section
get_crs - maptial.map.mapfunctions.MapFunctions.get_crs
get_description - maptial.geo.pdbobject.PdbObject.get_description
get_determinant
- maptial.xyz.matrixthree.MatrixThree.get_determinant
- maptial.xyz.matrixthreex.MatrixThreeX.get_determinant
- maptial.xyz.matrixthreey.MatrixThreeY.get_determinant
get_first_three - maptial.geo.pdbobject.PdbObject.get_first_three
get_fms - maptial.pol.interpolator.Interpolator.get_fms
get_fms_from_pos - maptial.pol.interpolator.Interpolator.get_fms_from_pos
get_hole3d - maptial.pol.interpolator.Bspline.get_hole3d
get_inner_determinant
- maptial.xyz.matrixthreex.MatrixThreeX.get_inner_determinant
- maptial.xyz.matrixthreey.MatrixThreeY.get_inner_determinant
get_inscope_atoms - maptial.geo.pdbobject.PdbObject.get_inscope_atoms
get_invariant
- maptial.pol.iv1.InvariantVandermonde.get_invariant
- maptial.pol.iv2.InvariantVandermonde.get_invariant
- maptial.pol.iv3.InvariantVandermonde.get_invariant
- maptial.pol.iv5.InvariantVandermonde.get_invariant
get_inverse
- maptial.xyz.matrixthree.MatrixThree.get_inverse
- maptial.xyz.matrixthreex.MatrixThreeX.get_inverse
- maptial.xyz.matrixthreey.MatrixThreeY.get_inverse
get_key
- maptial.geo.pdbobject.PdbObject.get_key
- maptial.xyz.matrixthree.MatrixThree.get_key
- maptial.xyz.matrixthreex.MatrixThreeX.get_key
- maptial.xyz.matrixthreey.MatrixThreeY.get_key
- maptial.xyz.vectorthree.VectorThree.get_key
get_laplacian
- maptial.pol.interpolator.Bspline.get_laplacian
- maptial.pol.interpolator.Interpolator.get_laplacian
- maptial.pol.interpolator.Linear.get_laplacian
- maptial.pol.interpolator.Multivariate.get_laplacian
- maptial.pol.interpolator.Nearest.get_laplacian
- maptial.pol.interpolator.Numpest.get_laplacian
get_laplacian_numerical - maptial.pol.interpolator.Interpolator.get_laplacian_numerical
get_laplacians
- maptial.pol.interpolator.Bspline.get_laplacians
- maptial.pol.interpolator.Interpolator.get_laplacians
- maptial.pol.interpolator.Linear.get_laplacians
- maptial.pol.interpolator.Multivariate.get_laplacians
- maptial.pol.interpolator.Nearest.get_laplacians
- maptial.pol.interpolator.Numpest.get_laplacians
get_laplacians_extended_list - maptial.pol.interpolator.Interpolator.get_laplacians_extended_list
get_laplacians_individual - maptial.pol.interpolator.Interpolator.get_laplacians_individual
get_laplacians_list_numerical - maptial.pol.interpolator.Interpolator.get_laplacians_list_numerical
get_map - maptial.map.mapsmanager.MapsManager.get_map
get_map_cross_section - maptial.map.mapfunctions.MapFunctions.get_map_cross_section
get_map_projection - maptial.map.mapfunctions.MapFunctions.get_map_projection
get_neighbours - maptial.geo.pdbobject.PdbObject.get_neighbours
get_next
- maptial.pol.iteration.Boxion.get_next
- maptial.pol.iteration.Iteration.get_next
- maptial.pol.iteration.Marquadtion.get_next
- maptial.pol.iteration.Minimation.get_next
- maptial.pol.iteration.Simplexion.get_next
- maptial.pol.iteration.Straightion.get_next
get_next_key - maptial.geo.pdbobject.PdbObject.get_next_key
get_or_create - maptial.map.mapsmanager.MapsManager.get_or_create
get_or_make_func - maptial.map.maploader.MapLoader.get_or_make_func
get_point_pos - maptial.xyz.vectorthree.VectorThree.get_point_pos
get_pole - maptial.pol.interpolator.Bspline.get_pole
get_pos_from_fms - maptial.pol.interpolator.Interpolator.get_pos_from_fms
get_projection - maptial.pol.interpolator.Interpolator.get_projection
get_radient
- maptial.pol.interpolator.Bspline.get_radient
- maptial.pol.interpolator.Interpolator.get_radient
- maptial.pol.interpolator.Linear.get_radient
- maptial.pol.interpolator.Multivariate.get_radient
- maptial.pol.interpolator.Nearest.get_radient
- maptial.pol.interpolator.Numpest.get_radient
get_radient_numerical - maptial.pol.interpolator.Interpolator.get_radient_numerical
get_radients
- maptial.pol.interpolator.Bspline.get_radients
- maptial.pol.interpolator.Interpolator.get_radients
- maptial.pol.interpolator.Linear.get_radients
- maptial.pol.interpolator.Multivariate.get_radients
- maptial.pol.interpolator.Nearest.get_radients
- maptial.pol.interpolator.Numpest.get_radients
get_radients_extended_list - maptial.pol.interpolator.Interpolator.get_radients_extended_list
get_radients_individual - maptial.pol.interpolator.Interpolator.get_radients_individual
get_radients_list_numerical - maptial.pol.interpolator.Interpolator.get_radients_list_numerical
get_rotation_angle - maptial.xyz.spacetransform.SpaceTransform.get_rotation_angle
get_row3d - maptial.pol.interpolator.Bspline.get_row3d
get_score
- maptial.pol.iteration.Iteration.get_score
- maptial.pol.scoring.AbsValueScore.get_score
- maptial.pol.scoring.LeastSquaresScore.get_score
- maptial.pol.scoring.Scoring.get_score
get_slice - maptial.map.mapfunctions.MapFunctions.get_slice
get_slice3d - maptial.pol.scoring.Scoring.get_slice3d
get_slice_neighbours - maptial.map.mapfunctions.MapFunctions.get_slice_neighbours
get_slices - maptial.map.mapfunctions.MapFunctions.get_slices
get_unit_grid - maptial.xyz.gridmaker.GridMaker.get_unit_grid
get_unit_grid3d - maptial.xyz.gridmaker.GridMaker.get_unit_grid3d
get_val_slice - maptial.pol.interpolator.Interpolator.get_val_slice
get_val_slice3d - maptial.pol.interpolator.Interpolator.get_val_slice3d
get_value
- maptial.pol.interpolator.Bspline.get_value
- maptial.pol.interpolator.Interpolator.get_value
- maptial.pol.interpolator.Linear.get_value
- maptial.pol.interpolator.Multivariate.get_value
- maptial.pol.interpolator.Nearest.get_value
- maptial.pol.interpolator.Numpest.get_value
- maptial.xyz.matrixthree.MatrixThree.get_value
- maptial.xyz.matrixthreex.MatrixThreeX.get_value
- maptial.xyz.matrixthreey.MatrixThreeY.get_value
get_value_multivariate - maptial.pol.interpolator.Multivariate.get_value_multivariate
get_values
- maptial.pol.interpolator.Bspline.get_values
- maptial.pol.interpolator.Interpolator.get_values
- maptial.pol.interpolator.Linear.get_values
- maptial.pol.interpolator.Multivariate.get_values
- maptial.pol.interpolator.Nearest.get_values
- maptial.pol.interpolator.Numpest.get_values
get_values_list - maptial.pol.interpolator.Interpolator.get_values_list
get_xyz - maptial.map.mapfunctions.MapFunctions.get_xyz
getAngle - maptial.geo.geocalculator.getAngle
getDihedral - maptial.geo.geocalculator.getDihedral
getDistance - maptial.geo.geocalculator.getDistance
getDxDx_numerical - maptial.pol.interpolator.Interpolator.getDxDx_numerical
getDyDy_numerical - maptial.pol.interpolator.Interpolator.getDyDy_numerical
getDzDz_numerical - maptial.pol.interpolator.Interpolator.getDzDz_numerical
getFooterString - maptial.geo.reportmaker.ReportMaker.getFooterString
getHeaderString - maptial.geo.reportmaker.ReportMaker.getHeaderString
getMagnitude - maptial.geo.geocalculator.getMagnitude
getMatchingAtoms
- maptial.geo.pdbcontacts.ContactMaker.getMatchingAtoms
- maptial.geo.pdbgeometry.GeometryMaker.getMatchingAtoms
getMatchingStartAtoms
- maptial.geo.pdbcontacts.ContactMaker.getMatchingStartAtoms
- maptial.geo.pdbgeometry.GeometryMaker.getMatchingStartAtoms
getNearestAtom
- maptial.geo.pdbcontacts.ContactMaker.getNearestAtom
- maptial.geo.pdbgeometry.GeometryMaker.getNearestAtom
getNearestAtomMatch
- maptial.geo.pdbcontacts.ContactMaker.getNearestAtomMatch
- maptial.geo.pdbgeometry.GeometryMaker.getNearestAtomMatch
getPlotImage - maptial.geo.reportmaker.ReportMaker.getPlotImage
GridMaker - maptial.xyz.gridmaker.GridMaker
gridmaker - maptial.xyz.gridmaker

H

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

h - maptial.pol.interpolator.Interpolator.h
has_both - maptial.map.maploader.MapLoader.has_both
header_as_string - maptial.map.mapobject.MapObject.header_as_string
html_string - maptial.geo.reportmaker.ReportMaker.html_string
HTMLIncrement - maptial.geo.reportmaker.ReportMaker.HTMLIncrement

I

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

incrementOverlay - maptial.geo.reportmaker.ReportMaker.incrementOverlay
info - maptial.geo.pdbobject.PdbAtom.info
infoAtom - maptial.geo.pdbobject.PdbAtom.infoAtom
infoAtoms
- maptial.geo.pdbcontacts.ContactMaker.infoAtoms
- maptial.geo.pdbgeometry.GeometryMaker.infoAtoms
infoResd - maptial.geo.pdbobject.PdbResidue.infoResd
init
- maptial.pol.interpolator.Bspline.init
- maptial.pol.interpolator.Linear.init
- maptial.pol.interpolator.Multivariate.init
- maptial.pol.interpolator.Nearest.init
- maptial.pol.interpolator.Numpest.init
- maptial.pol.iteration.Boxion.init
- maptial.pol.iteration.Marquadtion.init
- maptial.pol.iteration.Minimation.init
- maptial.pol.iteration.Simplexion.init
- maptial.pol.iteration.Straightion.init
- maptial.pol.scoring.AbsValueScore.init
- maptial.pol.scoring.LeastSquaresScore.init
initial_anticausal_coeffs - maptial.pol.interpolator.Bspline.initial_anticausal_coeffs
initial_causal_coeffs - maptial.pol.interpolator.Bspline.initial_causal_coeffs
interp_method
- maptial.map.mapfunctions.MapFunctions.interp_method
- maptial.map.mapplotter.MapPlotter.interp_method
interpA - maptial.pol.scoring.Scoring.interpA
interpB - maptial.pol.scoring.Scoring.interpB
interper - maptial.map.mapfunctions.MapFunctions.interper
interper_vals - maptial.map.mapfunctions.MapFunctions.interper_vals
Interpolator - maptial.pol.interpolator.Interpolator
interpolator - maptial.pol.interpolator
inv - maptial.pol.interpolator.Multivariate.inv
InvariantMaker - maptial.pol.invariantmaker.InvariantMaker
invariantmaker - maptial.pol.invariantmaker
InvariantVandermonde
- maptial.pol.iv1.InvariantVandermonde
- maptial.pol.iv2.InvariantVandermonde
- maptial.pol.iv3.InvariantVandermonde
- maptial.pol.iv5.InvariantVandermonde
is_minim
- maptial.pol.iteration.Boxion.is_minim
- maptial.pol.iteration.Iteration.is_minim
- maptial.pol.iteration.Marquadtion.is_minim
- maptial.pol.iteration.Minimation.is_minim
- maptial.pol.iteration.Simplexion.is_minim
- maptial.pol.iteration.Straightion.is_minim
Iteration - maptial.pol.iteration.Iteration
iteration - maptial.pol.iteration
iv1 - maptial.pol.iv1
iv2 - maptial.pol.iv2
iv3 - maptial.pol.iv3
iv5 - maptial.pol.iv5

L

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

LeastSquaresScore - maptial.pol.scoring.LeastSquaresScore
length - maptial.xyz.matrix3d.Matrix3d.length
Linear - maptial.pol.interpolator.Linear
linear
- maptial.map.mapplotter.MapPlotter.linear
- maptial.xyz.spacetransform.SpaceTransform.linear
lines - maptial.geo.pdbobject.PdbObject.lines
lines 0 - maptial.geo.pdbobject.PdbObject.lines 0
load - maptial.map.maploader.MapLoader.load
load_map - maptial.map.maploader.MapLoader.load_map
load_pdb
- maptial.geo.pdbloader.PdbLoader.load_pdb
- maptial.map.maploader.MapLoader.load_pdb
load_values - maptial.map.maploader.MapLoader.load_values
log
- maptial.geo.pdbcontacts.ContactMaker.log
- maptial.geo.pdbgeometry.GeometryMaker.log
log_level

M

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

M - maptial.map.mapobject.MapObject.M
M_PI
- maptial.xyz.crstransform.CrsTransform.M_PI
- maptial.xyz.spacetransform.SpaceTransform.M_PI
magnitude - maptial.xyz.vectorthree.VectorThree.magnitude
make_coeffs - maptial.pol.interpolator.Multivariate.make_coeffs
make_criticalpoint - maptial.pol.interpolator.Interpolator.make_criticalpoint
make_from_key - maptial.xyz.vectorthree.VectorThree.make_from_key
make_interper_if_needed - maptial.map.mapfunctions.MapFunctions.make_interper_if_needed
make_laplacian - maptial.pol.interpolator.Interpolator.make_laplacian
make_mat
- maptial.pol.iv1.InvariantVandermonde.make_mat
- maptial.pol.iv2.InvariantVandermonde.make_mat
- maptial.pol.iv3.InvariantVandermonde.make_mat
- maptial.pol.iv5.InvariantVandermonde.make_mat
make_periodic_coeffs - maptial.pol.interpolator.Bspline.make_periodic_coeffs
make_plot_slice_2d - maptial.map.mapplothelp.MapPlotHelp.make_plot_slice_2d
make_plot_slice_3d
- maptial.map.mapplothelp.MapPlotHelp.make_plot_slice_3d
- maptial.map.mapplotter.MapPlotter.make_plot_slice_3d
make_plot_slices - maptial.map.mapplotter.MapPlotter.make_plot_slices
make_radient - maptial.pol.interpolator.Interpolator.make_radient
map - maptial.map
map2crs - maptial.xyz.crstransform.CrsTransform.map2crs
map2xyz - maptial.xyz.crstransform.CrsTransform.map2xyz
map_header - maptial.map.mapobject.MapObject.map_header
MapFunctions - maptial.map.mapfunctions.MapFunctions
mapfunctions - maptial.map.mapfunctions
MapLoader - maptial.map.maploader.MapLoader
maploader - maptial.map.maploader
MapObject - maptial.map.mapobject.MapObject
mapobject - maptial.map.mapobject
MapPlotHelp - maptial.map.mapplothelp.MapPlotHelp
mapplothelp - maptial.map.mapplothelp
MapPlotter - maptial.map.mapplotter.MapPlotter
mapplotter - maptial.map.mapplotter
MapsManager - maptial.map.mapsmanager.MapsManager
mapsmanager - maptial.map.mapsmanager
maptial - maptial
Marquadtion - maptial.pol.iteration.Marquadtion
matchesCriteria - maptial.geo.pdbobject.PdbAtom.matchesCriteria
matrix
- maptial.xyz.matrix3d.Matrix3d.matrix
- maptial.xyz.matrixthreex.MatrixThreeX.matrix
- maptial.xyz.matrixthreey.MatrixThreeY.matrix
Matrix3d - maptial.xyz.matrix3d.Matrix3d
matrix3d - maptial.xyz.matrix3d
MatrixThree - maptial.xyz.matrixthree.MatrixThree
matrixthree - maptial.xyz.matrixthree
MatrixThreeX - maptial.xyz.matrixthreex.MatrixThreeX
matrixthreex - maptial.xyz.matrixthreex
MatrixThreeY - maptial.xyz.matrixthreey.MatrixThreeY
matrixthreey - maptial.xyz.matrixthreey
max - maptial.pol.interpolator.Interpolator.max
max_min - maptial.map.mapfunctions.MapFunctions.max_min
mean - maptial.map.maploader.MapLoader.mean
mean_diff - maptial.map.maploader.MapLoader.mean_diff
mfun - maptial.map.mapplotter.MapPlotter.mfun
mfunc - maptial.map.maploader.MapLoader.mfunc
min - maptial.pol.interpolator.Interpolator.min
Minimation - maptial.pol.iteration.Minimation
mobj
- maptial.map.mapfunctions.MapFunctions.mobj
- maptial.map.maploader.MapLoader.mobj
mtxCap - maptial.geo.reportmaker.ReportMaker.mtxCap
mtxCapMin - maptial.geo.reportmaker.ReportMaker.mtxCapMin
mult_vector - maptial.pol.interpolator.Interpolator.mult_vector
multiply
- maptial.xyz.matrixthree.MatrixThree.multiply
- maptial.xyz.matrixthreex.MatrixThreeX.multiply
- maptial.xyz.matrixthreey.MatrixThreeY.multiply
Multivariate - maptial.pol.interpolator.Multivariate

N

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

navigate - maptial.xyz.spacetransform.SpaceTransform.navigate
Nearest - maptial.pol.interpolator.Nearest
need_new - maptial.pol.interpolator.Multivariate.need_new
npy
- maptial.xyz.matrixthree.MatrixThree.npy
- maptial.xyz.vectorthree.VectorThree.npy
num_col - maptial.geo.reportmaker.ReportMaker.num_col
Numpest - maptial.pol.interpolator.Numpest

O

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

occupancy - maptial.geo.pdbobject.PdbAtom.occupancy
origin - maptial.xyz.crstransform.CrsTransform.origin
orthoMat - maptial.xyz.crstransform.CrsTransform.orthoMat
outpath - maptial.geo.reportmaker.ReportMaker.outpath
overlay_open - maptial.geo.reportmaker.ReportMaker.overlay_open

P

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

padded
- maptial.pol.interpolator.Bspline.padded
- maptial.pol.interpolator.Interpolator.padded
pdb_code
- maptial.geo.pdbloader.PdbLoader.pdb_code
- maptial.geo.pdbobject.PdbObject.pdb_code
- maptial.map.mapfunctions.MapFunctions.pdb_code
- maptial.map.mapobject.MapObject.pdb_code
pdb_filepath - maptial.geo.pdbloader.PdbLoader.pdb_filepath
pdb_link - maptial.map.mapobject.MapObject.pdb_link
pdb_loaded - maptial.map.maploader.MapLoader.pdb_loaded
pdb_url - maptial.geo.pdbloader.PdbLoader.pdb_url
PdbAtom - maptial.geo.pdbobject.PdbAtom
pdbcontacts - maptial.geo.pdbcontacts
pdbgeometry - maptial.geo.pdbgeometry
PdbLoader - maptial.geo.pdbloader.PdbLoader
pdbloader - maptial.geo.pdbloader
PdbObject - maptial.geo.pdbobject.PdbObject
pdbobject - maptial.geo.pdbobject
PdbResidue - maptial.geo.pdbobject.PdbResidue
pdbspace - maptial.geo.pdbspace
planar
- maptial.map.mapplotter.MapPlotter.planar
- maptial.xyz.spacetransform.SpaceTransform.planar
pload - maptial.map.maploader.MapLoader.pload
plot_details - maptial.map.mapplotter.MapPlotter.plot_details
plot_shape - maptial.map.mapplotter.MapPlotter.plot_shape
plots_2d - maptial.map.mapplothelp.MapPlotHelp.plots_2d
plots_3d - maptial.map.mapplothelp.MapPlotHelp.plots_3d
pobj
- maptial.geo.pdbloader.PdbLoader.pobj
- maptial.map.mapfunctions.MapFunctions.pobj
- maptial.map.maploader.MapLoader.pobj
pobjs
- maptial.geo.pdbcontacts.ContactMaker.pobjs
- maptial.geo.pdbgeometry.GeometryMaker.pobjs
points - maptial.pol.interpolator.Multivariate.points
pointsA - maptial.pol.iteration.Iteration.pointsA
pointsB - maptial.pol.iteration.Iteration.pointsB
pol - maptial.pol
print - maptial.xyz.matrix3d.Matrix3d.print
print_maps - maptial.map.mapsmanager.MapsManager.print_maps
printReport - maptial.geo.reportmaker.ReportMaker.printReport
put_by_idx - maptial.xyz.vectorthree.VectorThree.put_by_idx
put_coeff - maptial.pol.interpolator.Bspline.put_coeff
put_col3d - maptial.pol.interpolator.Bspline.put_col3d
put_hole3d - maptial.pol.interpolator.Bspline.put_hole3d
put_row3d - maptial.pol.interpolator.Bspline.put_row3d
put_value
- maptial.xyz.matrixthree.MatrixThree.put_value
- maptial.xyz.matrixthreex.MatrixThreeX.put_value
- maptial.xyz.matrixthreey.MatrixThreeY.put_value

R

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

reduce_vals_with_buffer - maptial.pol.interpolator.Bspline.reduce_vals_with_buffer
ReportMaker - maptial.geo.reportmaker.ReportMaker
reportmaker - maptial.geo.reportmaker
res - maptial.geo.pdbobject.PdbAtom.res
resolution
- maptial.geo.pdbobject.PdbObject.resolution
- maptial.map.mapobject.MapObject.resolution
ret_get - maptial.geo.pdbgeometry.ret_get
reverse_transformation - maptial.xyz.spacetransform.SpaceTransform.reverse_transformation
rid - maptial.geo.pdbobject.PdbResidue.rid
ridx - maptial.geo.pdbobject.PdbResidue.ridx
rotate - maptial.xyz.spacetransform.SpaceTransform.rotate
round

S

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

S - maptial.map.mapobject.MapObject.S
samples - maptial.map.mapplotter.MapPlotter.samples
save_as_file - maptial.pol.invariantmaker.InvariantMaker.save_as_file
Scoring - maptial.pol.scoring.Scoring
scoring
- maptial.pol.iteration.Iteration.scoring
- maptial.pol.scoring
set_cache - maptial.map.mapsmanager.MapsManager.set_cache
set_dir - maptial.map.mapsmanager.MapsManager.set_dir
set_from_np - maptial.xyz.matrix3d.Matrix3d.set_from_np
shape - maptial.xyz.matrix3d.Matrix3d.shape
simple_copy_coeffs - maptial.pol.interpolator.Bspline.simple_copy_coeffs
Simplexion - maptial.pol.iteration.Simplexion
SpaceTransform - maptial.xyz.spacetransform.SpaceTransform
spacetransform - maptial.xyz.spacetransform
std - maptial.map.maploader.MapLoader.std
std_diff - maptial.map.maploader.MapLoader.std_diff
Straightion - maptial.pol.iteration.Straightion
strge_container - maptial.map.mapsmanager.MapsManager.strge_container
sub_names - maptial.map.mapplotter.MapPlotter.sub_names
success - maptial.map.maploader.MapLoader.success

T

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

table_open - maptial.geo.reportmaker.ReportMaker.table_open
title - maptial.geo.reportmaker.ReportMaker.title
toJson - maptial.geo.pdbobject.PdbObject.toJson
TOLERANCE - maptial.pol.interpolator.Interpolator.TOLERANCE

V

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

v3_add - maptial.xyz.vectorthree.v3_add
v3_divide - maptial.xyz.vectorthree.v3_divide
v3_multiply - maptial.xyz.vectorthree.v3_multiply
v3_subtract - maptial.xyz.vectorthree.v3_subtract
Valid - maptial.xyz.vectorthree.VectorThree.Valid
values - maptial.map.mapobject.MapObject.values
values_loaded - maptial.map.maploader.MapLoader.values_loaded
values_loading - maptial.map.maploader.MapLoader.values_loading
VectorThree - maptial.xyz.vectorthree.VectorThree
vectorthree - maptial.xyz.vectorthree

W

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

wait_for_load - maptial.map.maploader.MapLoader.wait_for_load
width
- maptial.map.mapplotter.MapPlotter.width
- maptial.xyz.matrix3d.Matrix3d.width
write_done - maptial.map.maploader.MapLoader.write_done
write_starting_map - maptial.map.maploader.MapLoader.write_starting_map
write_starting_pdb - maptial.map.maploader.MapLoader.write_starting_pdb

X

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

x - maptial.geo.pdbobject.PdbAtom.x
x_volume
- maptial.pol.interpolator.Linear.x_volume
- maptial.pol.interpolator.Numpest.x_volume
xAxis - maptial.xyz.spacetransform.SpaceTransform.xAxis
xlen - maptial.xyz.axestransform.CrsTransform.xlen
xmap - maptial.xyz.axestransform.CrsTransform.xmap
xOrthog - maptial.xyz.spacetransform.SpaceTransform.xOrthog
xyz - maptial.xyz
xyz_to_crs
- maptial.xyz.axestransform.CrsTransform.xyz_to_crs
- maptial.xyz.crstransform.CrsTransform.xyz_to_crs

Y

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

y - maptial.geo.pdbobject.PdbAtom.y
y_volume
- maptial.pol.interpolator.Linear.y_volume
- maptial.pol.interpolator.Numpest.y_volume
yAxis - maptial.xyz.spacetransform.SpaceTransform.yAxis
ylen - maptial.xyz.axestransform.CrsTransform.ylen
ymap - maptial.xyz.axestransform.CrsTransform.ymap
yOrthog - maptial.xyz.spacetransform.SpaceTransform.yOrthog

Z

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

z - maptial.geo.pdbobject.PdbAtom.z
z_volume
- maptial.pol.interpolator.Linear.z_volume
- maptial.pol.interpolator.Numpest.z_volume
zAxis - maptial.xyz.spacetransform.SpaceTransform.zAxis
zlen - maptial.xyz.axestransform.CrsTransform.zlen
zmap - maptial.xyz.axestransform.CrsTransform.zmap
zOrthog - maptial.xyz.spacetransform.SpaceTransform.zOrthog

_

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - S - T - V - W - X - Y - Z - _

_1_translation - maptial.xyz.spacetransform.SpaceTransform._1_translation
_2_rotationXY - maptial.xyz.spacetransform.SpaceTransform._2_rotationXY
_3_rotationXZ - maptial.xyz.spacetransform.SpaceTransform._3_rotationXZ
_4_rotationYZ - maptial.xyz.spacetransform.SpaceTransform._4_rotationYZ
__get_colors__ - maptial.map.mapplothelp.MapPlotHelp.__get_colors__
__get_levels__ - maptial.map.mapplothelp.MapPlotHelp.__get_levels__
__init__
- maptial.geo.pdbcontacts.ContactMaker.__init__
- maptial.geo.pdbcontacts.GeometryRow.__init__
- maptial.geo.pdbgeometry.GeometryMaker.__init__
- maptial.geo.pdbgeometry.GeometryRow.__init__
- maptial.geo.pdbloader.PdbLoader.__init__
- maptial.geo.pdbobject.PdbAtom.__init__
- maptial.geo.pdbobject.PdbObject.__init__
- maptial.geo.pdbobject.PdbResidue.__init__
- maptial.geo.reportmaker.ReportMaker.__init__
- maptial.map.atom.Atom.__init__
- maptial.map.mapfunctions.MapFunctions.__init__
- maptial.map.maploader.MapLoader.__init__
- maptial.map.mapobject.MapObject.__init__
- maptial.map.mapplothelp.MapPlotHelp.__init__
- maptial.map.mapplotter.MapPlotter.__init__
- maptial.pol.interpolator.Interpolator.__init__
- maptial.pol.invariantmaker.InvariantMaker.__init__
- maptial.pol.iteration.Iteration.__init__
- maptial.pol.iv1.InvariantVandermonde.__init__
- maptial.pol.iv2.InvariantVandermonde.__init__
- maptial.pol.iv3.InvariantVandermonde.__init__
- maptial.pol.iv5.InvariantVandermonde.__init__
- maptial.pol.scoring.Scoring.__init__
- maptial.xyz.axestransform.CrsTransform.__init__
- maptial.xyz.crstransform.CrsTransform.__init__
- maptial.xyz.matrix3d.Matrix3d.__init__
- maptial.xyz.matrixthree.MatrixThree.__init__
- maptial.xyz.matrixthreex.MatrixThreeX.__init__
- maptial.xyz.matrixthreey.MatrixThreeY.__init__
- maptial.xyz.spacetransform.SpaceTransform.__init__
- maptial.xyz.vectorthree.VectorThree.__init__
__new__ - maptial.map.mapsmanager.MapsManager.__new__
__str__
- maptial.geo.pdbobject.PdbAtom.__str__
- maptial.geo.pdbobject.PdbObject.__str__
- maptial.geo.pdbobject.PdbResidue.__str__
_calculate_transformation - maptial.xyz.spacetransform.SpaceTransform._calculate_transformation
_ccp4_binary - maptial.map.maploader.MapLoader._ccp4_binary
_cif - maptial.map.maploader.MapLoader._cif
_coeffs - maptial.pol.interpolator.Bspline._coeffs
_create_mapdata_em - maptial.map.maploader.MapLoader._create_mapdata_em
_create_mapheader - maptial.map.maploader.MapLoader._create_mapheader
_create_mapvalues - maptial.map.maploader.MapLoader._create_mapvalues
_create_transformation
- maptial.xyz.axestransform.CrsTransform._create_transformation
- maptial.xyz.crstransform.CrsTransform._create_transformation
_diff_binary - maptial.map.maploader.MapLoader._diff_binary
_directory - maptial.map.maploader.MapLoader._directory
_F - maptial.pol.interpolator.Interpolator._F
_fetch_maplink_em - maptial.map.maploader.MapLoader._fetch_maplink_em
_fetch_maplink_xray - maptial.map.maploader.MapLoader._fetch_maplink_xray
_fetch_pdbdata - maptial.map.maploader.MapLoader._fetch_pdbdata
_filepath - maptial.map.maploader.MapLoader._filepath
_filepath_ccp4 - maptial.map.maploader.MapLoader._filepath_ccp4
_filepath_diff - maptial.map.maploader.MapLoader._filepath_diff
_get_quadrant - maptial.xyz.spacetransform.SpaceTransform._get_quadrant
_instance - maptial.map.mapsmanager.MapsManager._instance
_lock - maptial.map.mapsmanager.MapsManager._lock
_M - maptial.pol.interpolator.Interpolator._M
_make_origin - maptial.xyz.crstransform.CrsTransform._make_origin
_make_ortho - maptial.xyz.crstransform.CrsTransform._make_ortho
_npy
- maptial.pol.interpolator.Interpolator._npy
- maptial.pol.interpolator.Linear._npy
- maptial.pol.interpolator.Numpest._npy
_orig - maptial.pol.interpolator.Interpolator._orig
_rotate_ninety - maptial.xyz.spacetransform.SpaceTransform._rotate_ninety
_rotate_quadrant - maptial.xyz.spacetransform.SpaceTransform._rotate_quadrant
_S - maptial.pol.interpolator.Interpolator._S
_struc_dict - maptial.map.maploader.MapLoader._struc_dict
_xfloor - maptial.pol.interpolator.Multivariate._xfloor
_yfloor - maptial.pol.interpolator.Multivariate._yfloor
_zfloor - maptial.pol.interpolator.Multivariate._zfloor