maptial.geo.pdbobject.PdbObject

class documentation

class PdbObject(object):

Constructor: PdbObject(pdb_code)

Undocumented

Method	`__init__`	Undocumented
Method	`__str__`	Undocumented
Method	`add_atoms`	Undocumented
Method	`add_line_string`	Undocumented
Method	`dataFrame`	Undocumented
Method	`elementInList`	Undocumented
Method	`fromJson`	Undocumented
Method	`get_atm_key`	Undocumented
Method	`get_atom_coords`	Undocumented
Method	`get_coords`	Undocumented
Method	`get_coords_key`	Undocumented
Method	`get_description`	Undocumented
Method	`get_first_three`	Undocumented
Method	`get_inscope_atoms`	Undocumented
Method	`get_key`	Undocumented
Method	`get_neighbours`	Undocumented
Method	`get_next_key`	Undocumented
Method	`lines`	Undocumented
Method	`toJson`	Undocumented
Instance Variable	`bio_struc`	Undocumented
Instance Variable	`chains`	Undocumented
Instance Variable	`exc_hetatm`	Undocumented
Instance Variable	`exp_method`	Undocumented
Instance Variable	`pdb_code`	Undocumented
Instance Variable	`resolution`	Undocumented

def __init__(self, pdb_code): ¶

Undocumented

def __str__(self): ¶

Undocumented

def add_atoms(self, bio_struc): ¶

Undocumented

def add_line_string(self, aid, rid, aa, am, ch, ver, x, y, z, occ, bf, ele): ¶

Undocumented

def dataFrame(self): ¶

Undocumented

def elementInList(self, element, atomlist): ¶

Undocumented

def fromJson(self, jsndic): ¶

Undocumented

def get_atm_key(self, key): ¶

Undocumented

def get_atom_coords(self): ¶

Undocumented

def get_coords(self, atm): ¶

Undocumented

def get_coords_key(self, key): ¶

Undocumented

def get_description(self, atm, dis): ¶

Undocumented

def get_first_three(self): ¶

Undocumented

def get_inscope_atoms(self, anchor, distance, log_level=0): ¶

Undocumented

def get_key(self, atm): ¶

Undocumented

def get_neighbours(self, coord, rnge, atoms=None, ishtml=False): ¶

Undocumented

def get_next_key(self, key, offset=1): ¶

Undocumented

def lines(self, atoms=False): ¶

Undocumented

def toJson(self): ¶

Undocumented

bio_struc = ¶

Undocumented

chains: dict = ¶

Undocumented

exc_hetatm: bool = ¶

Undocumented

exp_method = ¶

Undocumented

pdb_code = ¶

Undocumented

resolution = ¶

Undocumented