maptial.map.maploader.MapLoader

class documentation

class MapLoader(object):

Constructor: MapLoader(pdb_code, directory, cif)

View In Hierarchy

Undocumented

Method __init__ Undocumented
Method already_started_map Undocumented
Method already_started_pdb Undocumented
Method cleanup Undocumented
Method download Undocumented
Method download_map Undocumented
Method download_pdb Undocumented
Method exists Undocumented
Method exists_map Undocumented
Method exists_pdb Undocumented
Method get_or_make_func Undocumented
Method load Undocumented
Method load_map Undocumented
Method load_pdb Undocumented
Method load_values Undocumented
Method success Undocumented
Method wait_for_load Undocumented
Method write_done Undocumented
Method write_starting_map Undocumented
Method write_starting_pdb Undocumented
Instance Variable em_code Undocumented
Instance Variable em_loaded Undocumented
Instance Variable has_both Undocumented
Instance Variable mean Undocumented
Instance Variable mean_diff Undocumented
Instance Variable mfunc Undocumented
Instance Variable mobj Undocumented
Instance Variable pdb_loaded Undocumented
Instance Variable pload Undocumented
Instance Variable pobj Undocumented
Instance Variable std Undocumented
Instance Variable std_diff Undocumented
Instance Variable values_loaded Undocumented
Instance Variable values_loading Undocumented
Method _create_mapdata_em Undocumented
Method _create_mapheader Undocumented
Method _create_mapvalues Undocumented
Method _fetch_maplink_em cif file EMDB EMD-6240 'associated EM volume' . pdb file REMARK 900 RELATED ID: EMD-6240 RELATED DB: EMDB
Method _fetch_maplink_xray Undocumented
Method _fetch_pdbdata Undocumented
Instance Variable _ccp4_binary Undocumented
Instance Variable _cif Undocumented
Instance Variable _diff_binary Undocumented
Instance Variable _directory Undocumented
Instance Variable _filepath Undocumented
Instance Variable _filepath_ccp4 Undocumented
Instance Variable _filepath_diff Undocumented
Instance Variable _struc_dict Undocumented
def __init__(self, pdb_code, directory='', cif=False):

Undocumented

def already_started_map(self):

Undocumented

def already_started_pdb(self):

Undocumented

def cleanup(self):

Undocumented

def download(self):

Undocumented

def download_map(self):

Undocumented

def download_pdb(self):

Undocumented

def exists(self):

Undocumented

def exists_map(self):

Undocumented

def exists_pdb(self):

Undocumented

def get_or_make_func(self, interp):

Undocumented

def load(self):

Undocumented

def load_map(self):

Undocumented

def load_pdb(self):

Undocumented

def load_values(self, diff=True, adj_zero=True):

Undocumented

def success(self):

Undocumented

def wait_for_load(self, log_level=0):

Undocumented

def write_done(self):

Undocumented

def write_starting_map(self):

Undocumented

def write_starting_pdb(self):

Undocumented

em_code =

Undocumented

em_loaded =

Undocumented

has_both: bool =

Undocumented

mean: int =

Undocumented

mean_diff: int =

Undocumented

mfunc =

Undocumented

mobj =

Undocumented

pdb_loaded =

Undocumented

pload =

Undocumented

pobj =

Undocumented

std: int =

Undocumented

std_diff: int =

Undocumented

values_loaded: bool =

Undocumented

values_loading: bool =

Undocumented

def _create_mapdata_em(self):

Undocumented

def _create_mapheader(self, ccp4_binary):

Undocumented

def _create_mapvalues(self, diff, adj_zero=True):

Undocumented

def _fetch_maplink_em(self):

cif file EMDB EMD-6240 'associated EM volume' . pdb file REMARK 900 RELATED ID: EMD-6240 RELATED DB: EMDB

def _fetch_maplink_xray(self):

Undocumented

def _fetch_pdbdata(self):

Undocumented

_ccp4_binary =

Undocumented

_cif =

Undocumented

_diff_binary =

Undocumented

_directory =

Undocumented

_filepath =

Undocumented

_filepath_ccp4 =

Undocumented

_filepath_diff =

Undocumented

_struc_dict =

Undocumented