Index of Names

Modules Classes Names

A

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

add_atoms - prometry.pdbobject.PdbObject.add_atoms
addBoxComment - prometry.reportmaker.ReportMaker.addBoxComment
addContours - prometry.reportmaker.ReportMaker.addContours
addDataFrame - prometry.reportmaker.ReportMaker.addDataFrame
addLineComment - prometry.reportmaker.ReportMaker.addLineComment
addPlot1d - prometry.reportmaker.ReportMaker.addPlot1d
addPlot2d - prometry.reportmaker.ReportMaker.addPlot2d
addPlotOnly - prometry.reportmaker.ReportMaker.addPlotOnly
addPlotPi - prometry.reportmaker.ReportMaker.addPlotPi
addPoints2d - prometry.reportmaker.ReportMaker.addPoints2d
addSeries - prometry.reportmaker.ReportMaker.addSeries
addSeries_Not - prometry.reportmaker.ReportMaker.addSeries_Not
addSeries_Transposed - prometry.reportmaker.ReportMaker.addSeries_Transposed
addSurface - prometry.reportmaker.ReportMaker.addSurface
amino_acid - prometry.pdbobject.PdbResidue.amino_acid
amino_acids - prometry.pdbobject.amino_acids
atom_name - prometry.pdbobject.PdbAtom.atom_name
atom_no - prometry.pdbobject.PdbAtom.atom_no
atom_type - prometry.pdbobject.PdbAtom.atom_type
atoms - prometry.pdbobject.PdbResidue.atoms
ax - prometry.reportmaker.ReportMaker.ax

B

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

bfactor - prometry.pdbobject.PdbAtom.bfactor
bio_struc - prometry.pdbobject.PdbObject.bio_struc

C

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

calculateContacts - prometry.pdbcontacts.ContactMaker.calculateContacts
calculateContacts 0 - prometry.pdbcontacts.ContactMaker.calculateContacts 0
calculateData
- prometry.pdbcontacts.ContactMaker.calculateData
- prometry.pdbgeometry.GeometryMaker.calculateData
calculateGeometry - prometry.pdbgeometry.GeometryMaker.calculateGeometry
calculateOneGeometry
- prometry.pdbcontacts.ContactMaker.calculateOneGeometry
- prometry.pdbgeometry.GeometryMaker.calculateOneGeometry
chain - prometry.pdbobject.PdbAtom.chain
chains - prometry.pdbobject.PdbObject.chains
changeColNumber - prometry.reportmaker.ReportMaker.changeColNumber
cif - prometry.pdbloader.PdbLoader.cif
cif_filepath - prometry.pdbloader.PdbLoader.cif_filepath
cif_url - prometry.pdbloader.PdbLoader.cif_url
clr_background - prometry.reportmaker.ReportMaker.clr_background
clr_behindplot - prometry.reportmaker.ReportMaker.clr_behindplot
clr_header - prometry.reportmaker.ReportMaker.clr_header
cols - prometry.reportmaker.ReportMaker.cols
ContactMaker - prometry.pdbcontacts.ContactMaker
crossProduct - prometry.geocalculator.crossProduct

D

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

dataFrame - prometry.pdbobject.PdbObject.dataFrame
directory - prometry.pdbloader.PdbLoader.directory
disordered - prometry.pdbobject.PdbAtom.disordered
download_pdb - prometry.pdbloader.PdbLoader.download_pdb

E

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

elementInList - prometry.pdbobject.PdbObject.elementInList
elements - prometry.pdbobject.PdbResidue.elements
exc_hetatm
exists_pdb - prometry.pdbloader.PdbLoader.exists_pdb
exp_method - prometry.pdbobject.PdbObject.exp_method

F

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

fig - prometry.reportmaker.ReportMaker.fig
filterDataFrame
- prometry.pdbcontacts.ContactMaker.filterDataFrame
- prometry.pdbgeometry.GeometryMaker.filterDataFrame

G

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

geocalculator - prometry.geocalculator
GeometryMaker - prometry.pdbgeometry.GeometryMaker
GeometryRow
- prometry.pdbcontacts.GeometryRow
- prometry.pdbgeometry.GeometryRow
geoToAtoms
- prometry.pdbcontacts.ContactMaker.geoToAtoms
- prometry.pdbgeometry.GeometryMaker.geoToAtoms
getAngle - prometry.geocalculator.getAngle
getDihedral - prometry.geocalculator.getDihedral
getDistance - prometry.geocalculator.getDistance
getFooterString - prometry.reportmaker.ReportMaker.getFooterString
getHeaderString - prometry.reportmaker.ReportMaker.getHeaderString
getMagnitude - prometry.geocalculator.getMagnitude
getMatchingAtoms
- prometry.pdbcontacts.ContactMaker.getMatchingAtoms
- prometry.pdbgeometry.GeometryMaker.getMatchingAtoms
getMatchingStartAtoms
- prometry.pdbcontacts.ContactMaker.getMatchingStartAtoms
- prometry.pdbgeometry.GeometryMaker.getMatchingStartAtoms
getNearestAtom
- prometry.pdbcontacts.ContactMaker.getNearestAtom
- prometry.pdbgeometry.GeometryMaker.getNearestAtom
getNearestAtomMatch
- prometry.pdbcontacts.ContactMaker.getNearestAtomMatch
- prometry.pdbgeometry.GeometryMaker.getNearestAtomMatch
getPlotImage - prometry.reportmaker.ReportMaker.getPlotImage

H

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

html_string - prometry.reportmaker.ReportMaker.html_string
HTMLIncrement - prometry.reportmaker.ReportMaker.HTMLIncrement

I

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

incrementOverlay - prometry.reportmaker.ReportMaker.incrementOverlay
info - prometry.pdbobject.PdbAtom.info
infoAtom - prometry.pdbobject.PdbAtom.infoAtom
infoAtoms
- prometry.pdbcontacts.ContactMaker.infoAtoms
- prometry.pdbgeometry.GeometryMaker.infoAtoms
infoResd - prometry.pdbobject.PdbResidue.infoResd

L

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

lines - prometry.pdbobject.PdbObject.lines
load_pdb - prometry.pdbloader.PdbLoader.load_pdb
log
- prometry.pdbcontacts.ContactMaker.log
- prometry.pdbgeometry.GeometryMaker.log

M

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

matchesCriteria - prometry.pdbobject.PdbAtom.matchesCriteria
mtxCap - prometry.reportmaker.ReportMaker.mtxCap
mtxCapMin - prometry.reportmaker.ReportMaker.mtxCapMin

N

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

num_col - prometry.reportmaker.ReportMaker.num_col

O

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

occupancy - prometry.pdbobject.PdbAtom.occupancy
outpath - prometry.reportmaker.ReportMaker.outpath
overlay_open - prometry.reportmaker.ReportMaker.overlay_open

P

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

pdb_code
- prometry.pdbloader.PdbLoader.pdb_code
- prometry.pdbobject.PdbObject.pdb_code
pdb_filepath - prometry.pdbloader.PdbLoader.pdb_filepath
pdb_url - prometry.pdbloader.PdbLoader.pdb_url
PdbAtom - prometry.pdbobject.PdbAtom
pdbcontacts - prometry.pdbcontacts
pdbgeometry - prometry.pdbgeometry
PdbLoader - prometry.pdbloader.PdbLoader
pdbloader - prometry.pdbloader
PdbObject - prometry.pdbobject.PdbObject
pdbobject - prometry.pdbobject
PdbResidue - prometry.pdbobject.PdbResidue
pdbspace - prometry.pdbspace
pobj - prometry.pdbloader.PdbLoader.pobj
pobjs
- prometry.pdbcontacts.ContactMaker.pobjs
- prometry.pdbgeometry.GeometryMaker.pobjs
printReport - prometry.reportmaker.ReportMaker.printReport
prometry - prometry

R

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

ReportMaker - prometry.reportmaker.ReportMaker
reportmaker - prometry.reportmaker
res - prometry.pdbobject.PdbAtom.res
resolution - prometry.pdbobject.PdbObject.resolution
ret_get - prometry.pdbgeometry.ret_get
rid - prometry.pdbobject.PdbResidue.rid
ridx - prometry.pdbobject.PdbResidue.ridx

T

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

table_open - prometry.reportmaker.ReportMaker.table_open
title - prometry.reportmaker.ReportMaker.title

X

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

x - prometry.pdbobject.PdbAtom.x

Y

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

y - prometry.pdbobject.PdbAtom.y

Z

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _

z - prometry.pdbobject.PdbAtom.z

_

A - B - C - D - E - F - G - H - I - L - M - N - O - P - R - T - X - Y - Z - _